If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 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'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 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'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 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'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ), 'gf_id' => 'HOM05D000655', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000655' ), 'data_identifier' => 'HOM05D000655', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000655', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '866', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16800' => 'bna', 'A02p40680' => 'bna', 'A02p40690' => 'bna', 'A02p40700' => 'bna', 'A04p01480' => 'bna', 'A04p10790' => 'bna', 'A05p12190' => 'bna', 'A06p44200' => 'bna', 'A06p47580' => 'bna', 'A07p37110' => 'bna', 'A09p52890' => 'bna', 'A10p02940' => 'bna', 'Aa31LG10G14970' => 'aar', 'Aa31LG1G20350' => 'aar', 'Aa31LG2G8240' => 'aar', 'Aa31LG4G10290' => 'aar', 'Aa31LG5G3290' => 'aar', 'Aa31LG5G3980' => 'aar', 'Aa31LG9G17460' => 'aar', 'Actinidia06489' => 'ach', 'Actinidia11372' => 'ach', 'Actinidia12199' => 'ach', 'Actinidia12386' => 'ach', 'Actinidia17206' => 'ach', 'Actinidia18712' => 'ach', 'Actinidia30131' => 'ach', 'Actinidia34034' => 'ach', 'Actinidia36635' => 'ach', 'Actinidia37547' => 'ach', 'Actinidia39929' => 'ach', 'Ah.04g155200' => 'amhyb', 'Ah.05g174770' => 'amhyb', 'AL1G14170' => 'aly', 'AL2G30120' => 'aly', 'AL3G14360' => 'aly', 'AL4G28980' => 'aly', 'AL5G10760' => 'aly', 'AL5G43020' => 'aly', 'AL7G46480' => 'aly', 'AL8G16130' => 'aly', 'Aqoxy2G03745' => 'aox', 'Aqoxy2G03768' => 'aox', 'Aqoxy3G00016' => 'aox', 'Aqoxy5G00149' => 'aox', 'Aqoxy5G03935' => 'aox', 'Aqoxy7G02466' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05JFC4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39CT4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39ZWNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3SR464' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y17C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8EB5MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SPTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUCQ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ERW5M8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGM4NK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1YGJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3YHKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KV9NUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKT5JH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1Z9KW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SRNN6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5QG8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THIA8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8WSRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ8A5J' => 'arhy', 'AT1G04520' => 'ath', 'AT1G70690' => 'ath', 'AT2G01660' => 'ath', 'AT2G33330' => 'ath', 'AT3G04370' => 'ath', 'AT3G60720' => 'ath', 'AT5G37660' => 'ath', 'AT5G43980' => 'ath', 'ATR0174G001' => 'atr', 'ATR0564G220' => 'atr', 'ATR0564G324' => 'atr', 'ATR0568G138' => 'atr', 'Atru.chr1.1992' => 'acertr', 'Atru.chr11.531' => 'acertr', 'Atru.chr2.1056' => 'acertr', 'Atru.chr2.1057' => 'acertr', 'Atru.chr4.1918' => 'acertr', 'Atru.chr5.1828' => 'acertr', 'Atru.chr5.272' => 'acertr', 'AUR62000626' => 'cqu', 'AUR62004179' => 'cqu', 'AUR62006979' => 'cqu', 'AUR62008789' => 'cqu', 'AUR62011646' => 'cqu', 'AUR62013678' => 'cqu', 'AUR62016167' => 'cqu', 'AUR62016474' => 'cqu', 'AUR62035083' => 'cqu', 'BcaB03g14836' => 'bca', 'BcaB05g24604' => 'bca', 'BcaB06g27115' => 'bca', 'BcaB07g29902' => 'bca', 'BcaC02g09593' => 'bca', 'BcaC02g10174' => 'bca', 'BcaC02g11418' => 'bca', 'BcaC03g15221' => 'bca', 'BcaC03g17989' => 'bca', 'BcaC03g17990' => 'bca', 'BcaC03g17991' => 'bca', 'BcaC03g17992' => 'bca', 'BcaC03g17993' => 'bca', 'BcaC03g17996' => 'bca', 'BcaC05g29946' => 'bca', 'BcaC06g31286' => 'bca', 'BcaC06g31666' => 'bca', 'BcaC06g34137' => 'bca', 'BcaC06g34607' => 'bca', 'BcaC07g40591' => 'bca', 'BcaC07g42633' => 'bca', 'BcaC08g46519' => 'bca', 'BolC2t08849H' => 'bol', 'BolC2t12091H' => 'bol', 'BolC2t12096H' => 'bol', 'BolC2t12097H' => 'bol', 'BolC2t12100H' => 'bol', 'BolC2t12101H' => 'bol', 'BolC2t12103H' => 'bol', 'BolC4t23146H' => 'bol', 'BolC4t24749H' => 'bol', 'BolC4t26021H' => 'bol', 'BolC5t29050H' => 'bol', 'BolC5t34937H' => 'bol', 'BolC6t39533H' => 'bol', 'BolC7t43181H' => 'bol', 'BolC7t43766H' => 'bol', 'BolC8t51157H' => 'bol', 'BraA02t06735Z' => 'bra', 'BraA02t09014Z' => 'bra', 'BraA02t09015Z' => 'bra', 'BraA02t09016Z' => 'bra', 'BraA02t09017Z' => 'bra', 'BraA04t15866Z' => 'bra', 'BraA04t16743Z' => 'bra', 'BraA05t20163Z' => 'bra', 'BraA06t27295Z' => 'bra', 'BraA06t27626Z' => 'bra', 'BraA07t31273Z' => 'bra', 'BraA09t40721Z' => 'bra', 'BraA10t42563Z' => 'bra', 'C02p28050' => 'bna', 'C02p60360' => 'bna', 'C02p60400' => 'bna', 'C02p60410' => 'bna', 'C02p60430' => 'bna', 'C02p60440' => 'bna', 'C02p60470' => 'bna', 'C02p60520' => 'bna', 'C02p60540' => 'bna', 'C04p15760' => 'bna', 'C04p31960' => 'bna', 'C04p44510' => 'bna', 'C05p02690' => 'bna', 'C06p44720' => 'bna', 'C07p26540' => 'bna', 'C07p32280' => 'bna', 'C08p35640' => 'bna', 'CAN.G220.70' => 'can', 'CAN.G2204.5' => 'can', 'CAN.G222.40' => 'can', 'CAN.G638.42' => 'can', 'CAN.G694.48' => 'can', 'CAN.G771.40' => 'can', 'CAN.G829.10' => 'can', 'CAN.G911.1' => 'can', 'CANSAT01G1681' => 'cansat', 'CANSAT01G2069' => 'cansat', 'CANSAT25G2719' => 'cansat', 'CANSAT54G1014' => 'cansat', 'CANSAT56G0507' => 'cansat', 'CANSAT56G3636' => 'cansat', 'CANSAT78G0277' => 'cansat', 'CARHR003860' => 'chi', 'CARHR063950' => 'chi', 'CARHR078550' => 'chi', 'CARHR127330' => 'chi', 'CARHR144230' => 'chi', 'CARHR171100' => 'chi', 'CARHR179380' => 'chi', 'CARHR215190' => 'chi', 'Carub.0001s0373' => 'cru', 'Carub.0002s1742' => 'cru', 'Carub.0003s0358' => 'cru', 'Carub.0004s1495' => 'cru', 'Carub.0005s0061' => 'cru', 'Carub.0005s2745' => 'cru', 'Carub.0007s3281' => 'cru', 'Carub.0008s0457' => 'cru', 'Ca_06870_v3' => 'car', 'Ca_08728_v3' => 'car', 'Ca_08737_v3' => 'car', 'Ca_09802_v3' => 'car', 'Ca_17093_v3' => 'car', 'Ca_17287_v3' => 'car', 'Ca_27340_v3' => 'car', 'Cc01_g17850' => 'ccan', 'Cc02_g24220' => 'ccan', 'Cc03_g06270' => 'ccan', 'Cc07_g13320' => 'ccan', 'Cc09_g02880' => 'ccan', 'Cc11_g06990' => 'ccan', 'CDE04G3480' => 'cde', 'CDE05G0593' => 'cde', 'CDE05G0784' => 'cde', 'CDE05G1431' => 'cde', 'CDE05G2194' => 'cde', 'CDE11G0442' => 'cde', 'CDE11G0495' => 'cde', 'CDE11G0896' => 'cde', 'Cfa002478' => 'cfa', 'Cfa006375' => 'cfa', 'Cfa007797' => 'cfa', 'Cfa015005' => 'cfa', 'Ciclev10005547m.g' => 'ccl', 'Ciclev10012358m.g' => 'ccl', 'Ciclev10016265m.g' => 'ccl', 'Ciclev10021437m.g' => 'ccl', 'Ciclev10024014m.g' => 'ccl', 'Ciclev10033575m.g' => 'ccl', 'CiPaw.01G178200' => 'cil', 'CiPaw.02G107200' => 'cil', 'CiPaw.03G073000' => 'cil', 'CiPaw.03G270200' => 'cil', 'CiPaw.04G190200' => 'cil', 'CiPaw.05G190200' => 'cil', 'CiPaw.06G050200' => 'cil', 'CiPaw.07G071500' => 'cil', 'CiPaw.13G034100' => 'cil', 'CiPaw.14G026900' => 'cil', 'ClCG01G006480' => 'cla', 'ClCG03G008780' => 'cla', 'ClCG05G004010' => 'cla', 'ClCG06G000550' => 'cla', 'ClCG06G007270' => 'cla', 'ClCG07G001380' => 'cla', 'ClCG07G005820' => 'cla', 'ClCG11G010420' => 'cla', 'COL.COLO4_10575' => 'col', 'COL.COLO4_12516' => 'col', 'COL.COLO4_13430' => 'col', 'COL.COLO4_15516' => 'col', 'COL.COLO4_15961' => 'col', 'COL.COLO4_16569' => 'col', 'Cpa.g.c27573.1' => 'cpa', 'Cpa.g.sc116.66' => 'cpa', 'Cpa.g.sc145.10' => 'cpa', 'Cpa.g.sc44.2' => 'cpa', 'Cpa.g.sc717.1' => 'cpa', 'Cpa.g.sc87.21' => 'cpa', 'CsaV3_2G009940' => 'csa', 'CsaV3_2G012430' => 'csa', 'CsaV3_3G011720' => 'csa', 'CsaV3_3G028350' => 'csa', 'CsaV3_5G023970' => 'csa', 'CsaV3_5G028090' => 'csa', 'CsaV3_5G037060' => 'csa', 'CsaV3_6G006320' => 'csa', 'CSS0002405' => 'camsi', 'CSS0017853' => 'camsi', 'CSS0018833' => 'camsi', 'CSS0027464' => 'camsi', 'CSS0032014' => 'camsi', 'CSS0032328' => 'camsi', 'CSS0032886' => 'camsi', 'CSS0035865' => 'camsi', 'CSS0037885' => 'camsi', 'CSS0045990' => 'camsi', 'DCAR_007325' => 'dca', 'DCAR_008545' => 'dca', 'DCAR_011631' => 'dca', 'DCAR_014167' => 'dca', 'DCAR_014168' => 'dca', 'DCAR_018516' => 'dca', 'DCAR_024292' => 'dca', 'DCAR_026795' => 'dca', 'DCAR_027348' => 'dca', 'DCAR_030258' => 'dca', 'Dinv05278' => 'din', 'Dinv16635' => 'din', 'Dinv18650' => 'din', 'Dinv18653' => 'din', 'Dinv19042' => 'din', 'Dinv27111' => 'din', 'Dinv28077' => 'din', 'Dinv28187' => 'din', 'Dinv29804' => 'din', 'Dinv43685' => 'din', 'Dinv44136' => 'din', 'Duzib052G1064' => 'dzi', 'Duzib128G1592' => 'dzi', 'Duzib133G0200' => 'dzi', 'Duzib138G0251' => 'dzi', 'Duzib138G1221' => 'dzi', 'Duzib138G1885' => 'dzi', 'Duzib151G0844' => 'dzi', 'Duzib212G0872' => 'dzi', 'Duzib248G1476' => 'dzi', 'Duzib251G0173' => 'dzi', 'Duzib268G0927' => 'dzi', 'ECA232G3830' => 'eca', 'ECA233G0304' => 'eca', 'ECA233G0446' => 'eca', 'ECA233G3445' => 'eca', 'ECA233G4200' => 'eca', 'ECA233G4580' => 'eca', 'ECA234G2329' => 'eca', 'ECA236G2340' => 'eca', 'ECA236G4140' => 'eca', 'ECA246G1093' => 'eca', 'ECA247G3273' => 'eca', 'EL10Ac1g00855' => 'bvu', 'EL10Ac1g00856' => 'bvu', 'EL10Ac3g04945' => 'bvu', 'EL10Ac4g09750' => 'bvu', 'EL10Ac7g17679' => 'bvu', 'EL10Ac9g22024' => 'bvu', 'Eucgr.B02954' => 'egr', 'Eucgr.E01472' => 'egr', 'Eucgr.F02869' => 'egr', 'Eucgr.G02112' => 'egr', 'Eucgr.H00130' => 'egr', 'Eucgr.H04220' => 'egr', 'Eucgr.J01605' => 'egr', 'Eucgr.K01431' => 'egr', 'FAN01G0446' => 'fan', 'FAN03G0343' => 'fan', 'FAN05G4269' => 'fan', 'FAN06G0377' => 'fan', 'FAN06G3734' => 'fan', 'FAN09G4541' => 'fan', 'FAN10G1239' => 'fan', 'FAN10G1320' => 'fan', 'FAN12G3332' => 'fan', 'FAN12G3666' => 'fan', 'FAN14G2094' => 'fan', 'FAN14G2266' => 'fan', 'FAN15G0740' => 'fan', 'FAN17G0092' => 'fan', 'FAN17G1294' => 'fan', 'FAN19G2469' => 'fan', 'FAN20G0343' => 'fan', 'FAN20G0420' => 'fan', 'FAN20G1101' => 'fan', 'FAN22G1664' => 'fan', 'FAN22G2093' => 'fan', 'FAN23G1615' => 'fan', 'FAN24G1463' => 'fan', 'FAN26G1602' => 'fan', 'FAN27G1004' => 'fan', 'FAN27G1514' => 'fan', 'FvH4_1g30260' => 'fve', 'FvH4_2g20590' => 'fve', 'FvH4_2g40340' => 'fve', 'FvH4_2g40360' => 'fve', 'FvH4_4g04620' => 'fve', 'FvH4_4g33800' => 'fve', 'FvH4_6g01600' => 'fve', 'FvH4_7g11310' => 'fve', 'Glyma.01G078000' => 'gma', 'Glyma.01G137600' => 'gma', 'Glyma.02G244200' => 'gma', 'Glyma.03G029501' => 'gma', 'Glyma.03G166900' => 'gma', 'Glyma.05G235200' => 'gma', 'Glyma.08G042600' => 'gma', 'Glyma.10G133900' => 'gma', 'Glyma.10G165400' => 'gma', 'Glyma.10G190500' => 'gma', 'Glyma.11G176310' => 'gma', 'Glyma.13G126700' => 'gma', 'Glyma.14G213600' => 'gma', 'Glyma.18G040800' => 'gma', 'Glyma.19G168000' => 'gma', 'Glyma.20G083000' => 'gma', 'Glyma.20G200200' => 'gma', 'Glyma.20G227400' => 'gma', 'Gohir.A01G147918' => 'ghi', 'Gohir.A03G117700' => 'ghi', 'Gohir.A04G142300' => 'ghi', 'Gohir.A07G097001' => 'ghi', 'Gohir.A07G151700' => 'ghi', 'Gohir.A07G204100' => 'ghi', 'Gohir.A08G036000' => 'ghi', 'Gohir.A08G136100' => 'ghi', 'Gohir.A09G227400' => 'ghi', 'Gohir.A10G107900' => 'ghi', 'Gohir.A11G079700' => 'ghi', 'Gohir.A11G245700' => 'ghi', 'Gohir.D01G141000' => 'ghi', 'Gohir.D02G141300' => 'ghi', 'Gohir.D04G185600' => 'ghi', 'Gohir.D07G101500' => 'ghi', 'Gohir.D07G158000' => 'ghi', 'Gohir.D07G210100' => 'ghi', 'Gohir.D08G046700' => 'ghi', 'Gohir.D08G156900' => 'ghi', 'Gohir.D09G228400' => 'ghi', 'Gohir.D10G158566' => 'ghi', 'Gohir.D11G084400' => 'ghi', 'Gohir.D11G256000' => 'ghi', 'Gorai.001G109400' => 'gra', 'Gorai.001G181200' => 'gra', 'Gorai.001G237500' => 'gra', 'Gorai.002G173300' => 'gra', 'Gorai.004G045900' => 'gra', 'Gorai.004G163200' => 'gra', 'Gorai.005G158500' => 'gra', 'Gorai.006G251100' => 'gra', 'Gorai.007G090000' => 'gra', 'Gorai.007G274300' => 'gra', 'Gorai.011G178200' => 'gra', 'Gorai.012G181900' => 'gra', 'GSVIVG01011675001' => 'vvi', 'GSVIVG01027651001' => 'vvi', 'GSVIVG01027913001' => 'vvi', 'GSVIVG01028413001' => 'vvi', 'GSVIVG01030681001' => 'vvi', 'HanXRQChr02g0059281' => 'han', 'HanXRQChr03g0081921' => 'han', 'HanXRQChr04g0108591' => 'han', 'HanXRQChr05g0144931' => 'han', 'HanXRQChr08g0224331' => 'han', 'HanXRQChr09g0258911' => 'han', 'HanXRQChr10g0280651' => 'han', 'HanXRQChr10g0299341' => 'han', 'HanXRQChr12g0363251' => 'han', 'HanXRQChr12g0363261' => 'han', 'HanXRQChr12g0363271' => 'han', 'HanXRQChr12g0363291' => 'han', 'HanXRQChr12g0363301' => 'han', 'HanXRQChr12g0363311' => 'han', 'HanXRQChr12g0363321' => 'han', 'HanXRQChr14g0434781' => 'han', 'HanXRQChr14g0440041' => 'han', 'HanXRQChr15g0468231' => 'han', 'HanXRQChr16g0520691' => 'han', 'HanXRQChr17g0567301' => 'han', 'Haze_02656' => 'cav', 'Haze_04404' => 'cav', 'Haze_10903' => 'cav', 'Haze_10908' => 'cav', 'Haze_11456' => 'cav', 'Haze_14275' => 'cav', 'Haze_24696' => 'cav', 'Hma1.2p1_0089F.1_g045490' => 'hma', 'Hma1.2p1_0158F.1_g070090' => 'hma', 'Hma1.2p1_1583F.1_g292010' => 'hma', 'Hma1.2p1_2139F.1_g314965' => 'hma', 'Hma1.2p1_2511F.1_g323630' => 'hma', 'Hma1.2p1_2783F.1_g328400' => 'hma', 'HPP92_005113' => 'vpl', 'HPP92_008528' => 'vpl', 'HPP92_022306' => 'vpl', 'HPP92_023493' => 'vpl', 'HPP92_024823' => 'vpl', 'Hund00637' => 'sun', 'Hund05482' => 'sun', 'Hund07181' => 'sun', 'Hund11938' => 'sun', 'Hund20673' => 'sun', 'Hund27374' => 'sun', 'Lalb_Chr01g0019521' => 'lal', 'Lalb_Chr01g0020311' => 'lal', 'Lalb_Chr01g0021451' => 'lal', 'Lalb_Chr02g0149021' => 'lal', 'Lalb_Chr02g0150701' => 'lal', 'Lalb_Chr02g0152711' => 'lal', 'Lalb_Chr10g0104301' => 'lal', 'Lalb_Chr16g0387661' => 'lal', 'Lalb_Chr18g0053471' => 'lal', 'Lalb_Chr19g0127341' => 'lal', 'Lalb_Chr21g0312511' => 'lal', 'Lj1g0001888' => 'lja', 'Lj1g0023406' => 'lja', 'Lj2A1143T50' => 'lonja', 'Lj2A522T68' => 'lonja', 'Lj2C44G24' => 'lonja', 'Lj2C520T4' => 'lonja', 'Lj3C648T4' => 'lonja', 'Lj4g0021988' => 'lja', 'Lj4P260T22' => 'lonja', 'Lj5g0002147' => 'lja', 'Lj5g0018540' => 'lja', 'Lj5g0027639' => 'lja', 'Lj6C622T2' => 'lonja', 'Lj6C739T6' => 'lonja', 'Lj6g0016655' => 'lja', 'Lj9A567T70' => 'lonja', 'LjContig00141g0024748' => 'lja', 'Lsat_1_v5_gn_0_520' => 'lsa', 'Lsat_1_v5_gn_2_41401' => 'lsa', 'Lsat_1_v5_gn_3_53301' => 'lsa', 'Lsat_1_v5_gn_4_42960' => 'lsa', 'Lsat_1_v5_gn_6_66060' => 'lsa', 'Lsat_1_v5_gn_8_115721' => 'lsa', 'Lsat_1_v5_gn_8_45460' => 'lsa', 'Lsat_1_v5_gn_8_45480' => 'lsa', 'Lsat_1_v5_gn_8_45500' => 'lsa', 'Lsat_1_v5_gn_8_92061' => 'lsa', 'Lsat_1_v5_gn_9_11440' => 'lsa', 'Manes.01G119300' => 'mes', 'Manes.01G267800' => 'mes', 'Manes.02G077700' => 'mes', 'Manes.03G159200' => 'mes', 'Manes.05G047800' => 'mes', 'Manes.08G140500' => 'mes', 'Manes.13G040200' => 'mes', 'Manes.15G045600' => 'mes', 'Manes.15G133100' => 'mes', 'Manes.17G082200' => 'mes', 'MBI04_g11441_MAGBIO' => 'mbi', 'MBI07_g35378_MAGBIO' => 'mbi', 'MBI10_g44684_MAGBIO' => 'mbi', 'MBI10_g46794_MAGBIO' => 'mbi', 'MBI19_g35813_MAGBIO' => 'mbi', 'MBI19_g36323_MAGBIO' => 'mbi', 'MD00G1060400' => 'mdo', 'MD00G1149100' => 'mdo', 'MD02G1208100' => 'mdo', 'MD04G1025700' => 'mdo', 'MD04G1232100' => 'mdo', 'MD07G1117900' => 'mdo', 'MD09G1271000' => 'mdo', 'MD13G1029600' => 'mdo', 'MD13G1221600' => 'mdo', 'MD16G1020400' => 'mdo', 'MD16G1226300' => 'mdo', 'MD17G1269100' => 'mdo', 'Medtr1g044560' => 'mtr', 'Medtr1g044580' => 'mtr', 'Medtr1g060780' => 'mtr', 'Medtr1g073320' => 'mtr', 'Medtr1g080350' => 'mtr', 'Medtr2g023410' => 'mtr', 'Medtr3g065370' => 'mtr', 'Medtr4g101440' => 'mtr', 'Medtr5g078030' => 'mtr', 'Medtr7g098410' => 'mtr', 'Medtr8g104990' => 'mtr', 'Medtr8g466070' => 'mtr', 'Medtr8g466640' => 'mtr', 'MELO3C005278.2' => 'cme', 'MELO3C006379.2' => 'cme', 'MELO3C008646.2' => 'cme', 'MELO3C012843.2' => 'cme', 'MELO3C022487.2' => 'cme', 'MELO3C022837.2' => 'cme', 'MELO3C023043.2' => 'cme', 'MELO3C026431.2' => 'cme', 'Migut.B01609' => 'egut', 'Migut.D00471' => 'egut', 'Migut.E00467' => 'egut', 'Migut.F02038' => 'egut', 'Migut.G00549' => 'egut', 'Migut.H02254' => 'egut', 'Migut.L00527' => 'egut', 'Migut.L00637' => 'egut', 'Migut.N00299' => 'egut', 'Migut.N02228' => 'egut', 'MSTRG.12518' => 'ama', 'MSTRG.17171' => 'ama', 'MSTRG.17524' => 'ama', 'MSTRG.2139' => 'ama', 'MSTRG.21463' => 'ama', 'MSTRG.24661' => 'ama', 'MSTRG.2623' => 'ama', 'MSTRG.27438' => 'ama', 'Nitab4.5_0000194g0250' => 'nta', 'Nitab4.5_0000201g0090' => 'nta', 'Nitab4.5_0000476g0240' => 'nta', 'Nitab4.5_0000845g0120' => 'nta', 'Nitab4.5_0000916g0060' => 'nta', 'Nitab4.5_0002210g0010' => 'nta', 'Nitab4.5_0002538g0060' => 'nta', 'Nitab4.5_0002751g0040' => 'nta', 'Nitab4.5_0003167g0120' => 'nta', 'Nitab4.5_0004679g0080' => 'nta', 'Nitab4.5_0005102g0100' => 'nta', 'Nitab4.5_0005647g0010' => 'nta', 'Nitab4.5_0006348g0030' => 'nta', 'Nitab4.5_0006629g0010' => 'nta', 'Nitab4.5_0007149g0010' => 'nta', 'Nitab4.5_0007231g0010' => 'nta', 'Nitab4.5_0009319g0020' => 'nta', 'Nn1g00339' => 'nnu', 'Nn1g01097' => 'nnu', 'Nn1g02955' => 'nnu', 'Nn2g15507' => 'nnu', 'Nn3g18340' => 'nnu', 'Nn3g18685' => 'nnu', 'Nn4g24321' => 'nnu', 'Nn6g34052' => 'nnu', 'Oeu001250.1' => 'oeu', 'Oeu008317.1' => 'oeu', 'Oeu011223.1' => 'oeu', 'Oeu011914.1' => 'oeu', 'Oeu018614.1' => 'oeu', 'Oeu019868.1' => 'oeu', 'Oeu030305.1' => 'oeu', 'Oeu037693.1' => 'oeu', 'Oeu060516.1' => 'oeu', 'Oeu062646.1' => 'oeu', 'Oeu062715.1' => 'oeu', 'Os02g0643900' => 'osa', 'Os02g0734800' => 'osa', 'Os03g0140500' => 'osa', 'Os04g0537800' => 'osa', 'Os06g0253600' => 'osa', 'Peaxi162Scf00013g02613' => 'pax', 'Peaxi162Scf00043g00296' => 'pax', 'Peaxi162Scf00153g01843' => 'pax', 'Peaxi162Scf00156g00923' => 'pax', 'Peaxi162Scf00319g00067' => 'pax', 'Peaxi162Scf00337g00919' => 'pax', 'Peaxi162Scf00517g00028' => 'pax', 'Peaxi162Scf00562g00096' => 'pax', 'Peaxi162Scf01350g00122' => 'pax', 'PGR004G0841' => 'pgr', 'PGR004G1944' => 'pgr', 'PGR031G0393' => 'pgr', 'PGR042G0933' => 'pgr', 'PGR044G1392' => 'pgr', 'PGR102G0817' => 'pgr', 'PGR142G1704' => 'pgr', 'PGR147G0003' => 'pgr', 'PGSC0003DMG400013408' => 'stu', 'PGSC0003DMG400015664' => 'stu', 'PGSC0003DMG400017195' => 'stu', 'PGSC0003DMG400020078' => 'stu', 'PGSC0003DMG400026009' => 'stu', 'PGSC0003DMG400029473' => 'stu', 'PGSC0003DMG402014605' => 'stu', 'Phvul.001G164400' => 'pvu', 'Phvul.001G229800' => 'pvu', 'Phvul.002G319900' => 'pvu', 'Phvul.007G117000' => 'pvu', 'Phvul.007G189600' => 'pvu', 'Phvul.007G231300' => 'pvu', 'Phvul.008G154300' => 'pvu', 'Phvul.008G237100' => 'pvu', 'Phvul.010G079800' => 'pvu', 'Phvul.L001744' => 'pvu', 'Potri.002G145400' => 'ptr', 'Potri.002G257300' => 'ptr', 'Potri.004G086000' => 'ptr', 'Potri.008G133500' => 'ptr', 'Potri.008G171700' => 'ptr', 'Potri.010G065800' => 'ptr', 'Potri.010G108100' => 'ptr', 'Potri.013G048200' => 'ptr', 'Potri.014G067000' => 'ptr', 'Potri.017G130800' => 'ptr', 'Prupe.1G048300' => 'ppe', 'Prupe.1G331900' => 'ppe', 'Prupe.2G140900' => 'ppe', 'Prupe.3G017500' => 'ppe', 'Prupe.6G351500' => 'ppe', 'Prupe.8G216200' => 'ppe', 'Psat2g046360' => 'psa', 'Psat3g054640' => 'psa', 'Psat3g054680' => 'psa', 'Psat3g168000' => 'psa', 'Psat5g121040' => 'psa', 'Psat6g107400' => 'psa', 'Psat6g131440' => 'psa', 'Psat6g143880' => 'psa', 'Psat7g009120' => 'psa', 'PSO017G3691' => 'pso', 'PSO017G6045' => 'pso', 'PSO063G4308' => 'pso', 'PSO135G0843' => 'pso', 'PSO170G2297' => 'pso', 'PSO384G2659' => 'pso', 'PSO478G3313' => 'pso', 'PSO782G3122' => 'pso', 'QL02p058498' => 'qlo', 'QL03p029680' => 'qlo', 'QL03p035062' => 'qlo', 'QL04p039551' => 'qlo', 'QL06p020977' => 'qlo', 'QL09p041261' => 'qlo', 'QL10p014209' => 'qlo', 'QL93p0170_0130' => 'qlo', 'RcHm_v2.0_Chr1g0328161' => 'rch', 'RcHm_v2.0_Chr1g0349511' => 'rch', 'RcHm_v2.0_Chr1g0372961' => 'rch', 'RcHm_v2.0_Chr3g0449411' => 'rch', 'RcHm_v2.0_Chr3g0491121' => 'rch', 'RcHm_v2.0_Chr3g0491131' => 'rch', 'RcHm_v2.0_Chr3g0491141' => 'rch', 'RcHm_v2.0_Chr4g0395391' => 'rch', 'RcHm_v2.0_Chr4g0443311' => 'rch', 'RcHm_v2.0_Chr6g0286761' => 'rch', 'RcHm_v2.0_Chr6g0300411' => 'rch', 'Rhsim02G0043600' => 'rsi', 'Rhsim04G0172500' => 'rsi', 'Rhsim05G0171200' => 'rsi', 'Rhsim07G0030000' => 'rsi', 'Rhsim09G0038400' => 'rsi', 'Rhsim09G0091600' => 'rsi', 'Rhsim10G0178100' => 'rsi', 'Rhsim13G0039800' => 'rsi', 'RhsimUnG0222100' => 'rsi', 'Sabra02G0195700' => 'sbr', 'Sabra08G0102100' => 'sbr', 'Sabra10G0041400' => 'sbr', 'Sabra10G0079100' => 'sbr', 'Sabra13G0044200' => 'sbr', 'Sabra14G0047100' => 'sbr', 'Sabra17G0108900' => 'sbr', 'SalBow1G7157' => 'sbo', 'SalBow2G3375' => 'sbo', 'SalBow3G1337' => 'sbo', 'SalBow3G1844' => 'sbo', 'SalBow3G2555' => 'sbo', 'SalBow5G0309' => 'sbo', 'SalBow5G0894' => 'sbo', 'SalBow6G2336' => 'sbo', 'SalBow6G4180' => 'sbo', 'SalBow8G4725' => 'sbo', 'Sc02g0002690' => 'sci', 'Sc04g0005240' => 'sci', 'Sc09g0001900' => 'sci', 'Sc13g0006210' => 'sci', 'Sc14g0006530' => 'sci', 'Sc17g0002840' => 'sci', 'Sc18g0003340' => 'sci', 'Sc19g0003350' => 'sci', 'Sed0006039' => 'sed', 'Sed0010240' => 'sed', 'Sed0010613' => 'sed', 'Sed0011206' => 'sed', 'Sed0011633' => 'sed', 'Sed0013231' => 'sed', 'Sed0013316' => 'sed', 'Sed0015357' => 'sed', 'Sed0016904' => 'sed', 'Sed0017406' => 'sed', 'Sed0017841' => 'sed', 'Sed0018046' => 'sed', 'Sed0021759' => 'sed', 'Sed0024445' => 'sed', 'Sed0027750' => 'sed', 'SEGI_14311' => 'sgi', 'SEGI_15854' => 'sgi', 'SEGI_32229' => 'sgi', 'SEGI_38447' => 'sgi', 'SGA_v2.0_scaffold113G31769' => 'sas', 'SGA_v2.0_scaffold139G35404' => 'sas', 'SGA_v2.0_scaffold1G00648' => 'sas', 'SGA_v2.0_scaffold31G12630' => 'sas', 'SGA_v2.0_scaffold344G49476' => 'sas', 'SGA_v2.0_scaffold42G16177' => 'sas', 'SGA_v2.0_scaffold45G17162' => 'sas', 'SHI04466' => 'shi', 'SMO196G0144' => 'smo', 'Solyc01g091040.3' => 'sly', 'Solyc03g005690.3' => 'sly', 'Solyc04g007950.4' => 'sly', 'Solyc05g051270.3' => 'sly', 'Solyc05g055930.2' => 'sly', 'Solyc06g083750.3' => 'sly', 'Solyc09g090680.3' => 'sly', 'Solyc11g011000.2' => 'sly', 'Sopen01g036770' => 'spe', 'Sopen03g001700' => 'spe', 'Sopen04g003090' => 'spe', 'Sopen05g029650' => 'spe', 'Sopen05g034330' => 'spe', 'Sopen06g035160' => 'spe', 'Sopen09g033620' => 'spe', 'Sopen11g005760' => 'spe', 'Sp1g03350' => 'spa', 'Sp2g08810' => 'spa', 'Sp2g13110' => 'spa', 'Sp2g23020' => 'spa', 'Sp3g03270' => 'spa', 'Sp4g15640' => 'spa', 'Sp5g02530' => 'spa', 'Sp5g25860' => 'spa', 'Sp7g04430' => 'spa', 'TAR362G0049' => 'tar', 'TAR365G0828' => 'tar', 'TAR371G0039' => 'tar', 'TAR371G0584' => 'tar', 'TAR388G0002' => 'tar', 'TAR622G0261' => 'tar', 'TAR622G1442' => 'tar', 'TAR629G0172' => 'tar', 'TAR629G0797' => 'tar', 'TAR633G0807' => 'tar', 'TAR636G2355' => 'tar', 'THA.LOC104801065' => 'tha', 'THA.LOC104801124' => 'tha', 'THA.LOC104805974' => 'tha', 'THA.LOC104809108' => 'tha', 'THA.LOC104816007' => 'tha', 'THA.LOC104817231' => 'tha', 'THA.LOC104820764' => 'tha', 'THA.LOC104823088' => 'tha', 'THA.LOC104825961' => 'tha', 'Thecc.01G251300' => 'tca', 'Thecc.01G379700' => 'tca', 'Thecc.02G290900' => 'tca', 'Thecc.04G054600' => 'tca', 'Thecc.04G263600' => 'tca', 'Thecc.05G268000' => 'tca', 'Thhalv10003249m.g' => 'esa', 'Thhalv10004723m.g' => 'esa', 'Thhalv10006142m.g' => 'esa', 'Thhalv10008311m.g' => 'esa', 'Thhalv10017042m.g' => 'esa', 'Thhalv10019845m.g' => 'esa', 'Thhalv10022119m.g' => 'esa', 'Thhalv10027869m.g' => 'esa', 'TPR.G23978' => 'tpr', 'TPR.G24912' => 'tpr', 'TPR.G26611' => 'tpr', 'TPR.G28842' => 'tpr', 'TPR.G31886' => 'tpr', 'TPR.G32088' => 'tpr', 'TPR.G32704' => 'tpr', 'TPR.G39109' => 'tpr', 'TPR.G7231' => 'tpr', 'TPR.G8274' => 'tpr', 'TWI12G0560' => 'twi', 'TWI53G1082' => 'twi', 'TWI53G1215' => 'twi', 'TWI59G0158' => 'twi', 'TWI60G0398' => 'twi', 'TWI73G0789' => 'twi', 'TWI74G0465' => 'twi', 'TWI74G1224' => 'twi', 'unitig_26.g9724' => 'ugi', 'unitig_27.g25157' => 'ugi', 'unitig_62.g23744' => 'ugi', 'unitig_748.g8468' => 'ugi', 'unitig_749.g13732' => 'ugi', 'vmacro02708' => 'vma', 'vmacro07707' => 'vma', 'vmacro08553' => 'vma', 'vmacro10690' => 'vma', 'vmacro13428' => 'vma', 'vmacro15477' => 'vma', 'vmacro19983' => 'vma', 'vmacro22458' => 'vma', 'VMungo0251G1508' => 'vmu', 'VMungo0251G3495' => 'vmu', 'VMungo0331G1019' => 'vmu', 'VMungo0720G1178' => 'vmu', 'VMungo0720G1893' => 'vmu', 'VMungo0720G2552' => 'vmu', 'VMungo0720G2726' => 'vmu', 'VMungo1383G0599' => 'vmu', 'VMungo1383G1221' => 'vmu', 'VMungo1383G2753' => 'vmu', 'Zm00001eb075470' => 'zma', 'Zm00001eb186090' => 'zma', 'Zm00001eb253780' => 'zma', 'Zm00001eb280720' => 'zma', 'Zm00001eb371540' => 'zma' ) $gf_id = 'HOM05D000655' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000655' ) $data_identifier = 'HOM05D000655' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 16, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 20, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 8, 'lonja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 13, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppe' => (int) 6, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 11, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 15, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 10, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1